Version 1.0.0 (15/03/2023): - JSS article Version 0.6.7 (17/05/2022): - update print methods - debug formula version - inherits instead of class Version 0.6.6 (24/08/2021): - bug: manage when all p-values are NaN - add checks and example for predict function Version 0.6.5 (11/11/2020): - add addRoot argument in HMT, hierarchicalFWER, hierarchicalFDR functions - add Shaffer argument in HMT function - change maintainer's email Version 0.6.1 (30/12/2019): - remove a print - add missing argument when calling .checkParameters function Version 0.6 (01/12/2019): - perform bootstrap for hierarchical clustering - add sizeMaxGroup argument to MLGL, cv.MLGL functions - threshold is correctly plotted in plot.stability Version 0.5 (24/09/2018): - documentation correction - update DESCRIPTION file with authors - add print and summary functions for MLGL - add plot, print and summary functions for fullProcess - add a formula version of MLGL and fullProcess functions - add HMT function with plot, pritn and summary - remove logistic loss from fullProcess and remove test for logistic problem Version 0.4 (14/01/2017): - add logistic loss in MLGL, cv.MLGL, stability and overlap - add test for logistic loss - add logistic loss in fullProcess - add sample size parameter in fullProcess Version 0.3.2 (30/09/2016): - optimization of hierarchicalFWER Version 0.3.1 (22/09/2016): - bug correction in hierarchicalFWER - optimization of fullProcess Version 0.3 (09/09/2016): - rename the package into MLGL - change name of functions including "HCgglasso" Version 0.2.5 (25/08/2016): - change parameters of selFDR and selFWER functions Version 0.2.4 (01/08/2016): - add hierarchical testing procedure - add fullProcess function performing HC + Glasso + Hierarchical Testing - correction in stability.HCgglasso for the generation of lambda values Version 0.2.3 (20/01/2016): - change the level information in HCgglasso structure output Version 0.2.2 (06/10/2015): - correction for infinite weight in weightLevelGroup - use hclust from fastcluster package - update documentation Version 0.2.1: - in levelMinWeight function, change minLevelWeight in sqrt(minLevelWeight) Version 0.2: - first version of HCgglasso